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PhysiCell analysis for breast cancer metastasis model
16 Nov 2023 | Contributor(s):: Randy Heiland, Lima Da Rocha, Heber, Paul Macklin
PhysiCell model analysis of breast cancer metastasis
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PhysiCell Studio worms model
04 Aug 2023 | Contributor(s):: Randy Heiland
Simulate worms using PhysiCell Studio
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PhysiCell Studio
Tools | 22 Jun 2023 | Contributor(s):: Randy Heiland, Paul Macklin
PhysiCell Studio tool to build multicellular models
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PhysiCell modeling demos
Tools | 04 Jun 2023 | Contributor(s):: Randy Heiland, Paul Macklin
PhysiCell modeling demos
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Multiscale model of the different modes of invasion
Tools | 02 Jun 2022 | Contributor(s):: Marco Ruscone, Arnau Montagud, Laurence Calzone, Vincent Noel
Simulate 2D/3D cancer cell invasion in extracellular matrix with PhysiBoSS
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PhysiCell for cell mechanics on a 2D membrane
Tools | 24 Mar 2022 | Contributor(s):: Randy Heiland, Paul Macklin, Shakeel Ahamed Davanagere
Simulate cell dynamics near a curved membrane in 2D
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PhysiCell COVID19 model v6 test
Tools | 11 Feb 2022 | Contributor(s):: Randy Heiland, Paul Macklin
PhysiCell COVID19 model v6 early testing
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PhysiCell learning by examples
Tools | 01 Feb 2022 | Contributor(s):: Randy Heiland, Paul Macklin
Demonstrate PhysiCell modeling via sample models
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PhysiCell for Kidney FTU
Tools | 20 Jan 2022 | Contributor(s):: Randy Heiland, Paul Macklin
PhysiCell Model for the HuBMAP Kidney FTU (v2)
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PhysiCell for tumor3D for ML
Tools | 22 Nov 2021 | Contributor(s):: Randy Heiland, Paul Macklin
App to for the IU HuBMAP ML team
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PhysiCell for Kidney FTU
Tools | 28 Sep 2021 | Contributor(s):: Randy Heiland, Paul Macklin
PhysiCell Model for the HuBMAP Kidney FTU
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PhysiCell simulation of GBM tumour under oHSV1 treatment
Tools | 28 Mar 2021 | Contributor(s):: Adrianne Jenner, Randy Heiland, Paul Macklin
Simulation for GBM fragment growth under oHSV1 treatment published in Jenner et al. (2021)
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How Simple Cell-Cell Interactions Lead to Complex Multicellular Dynamics
Online Presentations | 04 Feb 2021 | Contributor(s):: Paul Macklin
In this talk, we use agent-based simulation models to simulate (1) individual cell behaviors, (2) cell-cell interactions, and (3) cell-environment interactions to show how simple rules can give rise to complex multicellular phenomena. We showcase and explore free, interactive online tools to...
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Biology of COVID-19 Attack on Epithelial Cells, understood from a Modeling and Simulation Perspective
Online Presentations | 04 Feb 2021 | Contributor(s):: Paul Macklin
n this session, we describe a community-driven effort to iteratively develop a multiscale, spatially-resolved open source model of SARS-CoV-2 dynamics and immune response in tissues.
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PhysiCell 3D tumor
Tools | 20 Jan 2021 | Contributor(s):: Randy Heiland, Paul Macklin, Koudoro, Serge, Javier Guaje
Simulate a 3D spheroid cancer tumor with PhysiCell
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Cycle Training App for PhysiCell
Tools | 18 Dec 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland, Paul Macklin
Training application for "Cycle" concept in PhysiCell.
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Three-Type Multicellular Simulation Lab
Tools | 09 Nov 2020 | Contributor(s):: Paul Macklin, Randy Heiland
An analog of the 3-body problem: modeling 3 interacting cell types in a dynamic environment
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PhysiBoSS simulation of COVID19 infection
Tools | 27 Oct 2020 | Contributor(s):: Vincent Noel, Miguel Ponce de Leon, Anna Niarakis, Laurence Calzone, Alfonso Valencia, Arnau Montagud
PhysiBoSS-COVID: the Boolean modelling of COVID-19 signalling pathways in a multicellular simulation framework
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PhysiCell model for tumor hypoxia
Tools | 07 Aug 2020 | Contributor(s):: Lima Da Rocha, Heber, Paul Macklin, Furkan Kurtoglu
Multicellular simulation in 2-D of tumor hypoxia.
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COVID-19 data analysis
Tools | 07 Aug 2020 | Contributor(s):: Randy Heiland, Paul Macklin
Perform data analysis in a Jupyter notebook using data from the pc4covid19 tool.