PhysiCell for cell mechanics on a 2D membrane

Simulate cell dynamics near a curved membrane in 2D

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Version 1.4 - published on 16 May 2022

doi:10.21981/Y3BE-D697 cite this

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Abstract

This app simulates a PhysiCell model to test cell dynamics near an artificial membrane. This model is part of HuBMAP project.

Select the Run tab, and click "Run Simulation". The simulation's terminal output will appear in that tab. Once the simulation is done (or even before it completes), select the "Plot" tab and click "Play" to see the visual results of the simulation.


This model and cloud-hosted demo are part of a course on computational multicellular systems biology created and taught by 
Dr. Paul Macklin in the Department of Intelligent Systems Engineering at Indiana University. It is also part of the education 
and outreach for the IU Engineered nanoBIO Node and the NCI-funded cancer systems biology grant U01CA232137, as well as NIH 1OT2OD026671-01. 
The models are built using PhysiCell, a C++ framework for multicellular systems biology [1].

Cite this work

Researchers should cite this work as follows:

  • Randy Heiland, Paul Macklin, Shakeel Ahamed Davanagere (2022), "PhysiCell for cell mechanics on a 2D membrane," https://nanohub.org/resources/pc4membrane2d. (DOI: 10.21981/Y3BE-D697).

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Tags

  1. HuBMAP
  2. nanoBIO tools
  3. PhysiCell