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BNNTs
Animations | 21 Aug 2022 | Contributor(s):: Shawna Lee-Paul, Rice University
Boron nitride nanotubes (BNNTs) are nano particles with unique properties, including high mechanical strength, high thermal conductivity, and neutron shielding capacity. These properties are beneficial for numerous applications, such as aerospace, electronics, and energy-efficient...
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PhysiCell COVID19 model v6 test
Tools | 11 Feb 2022 | Contributor(s):: Randy Heiland, Paul Macklin
PhysiCell COVID19 model v6 early testing
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Winter Interactive nanoBIO Workshop
Workshops | 04 Feb 2021 | Contributor(s):: Ballard, Joshua Brendan (editor)
The Winter Interactive nanoBIO Workshop will walk students and researchers through how to understand a variety of biological problems using simulations based on cloud-based tools on nanoHUB or other easy to use platforms.
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Deep Learning for Time Series Illustrated by COVID-19 Infection Studies
Online Presentations | 04 Feb 2021 | Contributor(s):: Geoffrey C. Fox
We show that one can study several sets of sequences or time-series in terms of an underlying evolution operator which can be learned with a deep learning network.
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Biology of COVID-19 Attack on Epithelial Cells, understood from a Modeling and Simulation Perspective
Online Presentations | 04 Feb 2021 | Contributor(s):: Paul Macklin
n this session, we describe a community-driven effort to iteratively develop a multiscale, spatially-resolved open source model of SARS-CoV-2 dynamics and immune response in tissues.
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Modeling a COVID-19 Pandemic with a BSVIRD Model
Tools | 28 Jan 2021 | Contributor(s):: Brian Yu, James A Glazier (editor), Josua Oscar Aponte-Serrano (editor)
This model emulates the introduction of a two-dose vaccine in a COVID-19 pandemic, focusing on the United States.
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A Vaccine Model for COVID-19
Tools | 25 Jan 2021 | Contributor(s):: Kali Nicole Konstantinopoulos, James A Glazier (editor), Josua Oscar Aponte-Serrano (editor)
Simulate the introduction of a vaccine in the COVID-19 pandemic, focused on the US.
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Understanding COVID-19 Infection, Immune Response, and Drug Therapy through Multiscale, Multicellular Modeling and Simulation
Online Presentations | 10 Dec 2020 | Contributor(s):: T.J. Sego
This workshop presents an open-source Python- and XML-scripted multiscale modeling and simulation framework of an epithelial tissue infected by a virus, a simplified cellular immune response and viral and immune-induced tissue damage and shows how to use it to model basic patterns of infection...
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Saliva-Based Testing for COVID-19
Online Presentations | 22 Nov 2020 | Contributor(s):: Mohit Verma
The Verma lab is developing a molecular test for SARS-CoV-2 that detects the RNA and produces a color change in less than one hour. Using saliva as the sample, this test is easier to use at the point-of-care.
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Nov 11 2020
Materials Science for COVID-19: A Global Discussion Between Scientists
Presented by MRS and The Society for Biomaterials (SFB)This webinar, hosted by Aleksandra Benko, AGH University of Science and Technology, will bring together researchers from all around the world...
https://nanohub.org/events/details/1880
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PhysiBoSS simulation of COVID19 infection
Tools | 27 Oct 2020 | Contributor(s):: Vincent Noel, Miguel Ponce de Leon, Anna Niarakis, Laurence Calzone, Alfonso Valencia, Arnau Montagud
PhysiBoSS-COVID: the Boolean modelling of COVID-19 signalling pathways in a multicellular simulation framework
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COVID-19 data analysis
Tools | 07 Aug 2020 | Contributor(s):: Randy Heiland, Paul Macklin
Perform data analysis in a Jupyter notebook using data from the pc4covid19 tool.
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Multicellular modeling of SARS-CoV-2 dynamics and virion mediated cell fusion with antiviral drug effects
Tools | 27 Jul 2020 | Contributor(s):: Yafei Wang, Michael Getz, Randy Heiland, Paul Macklin
Simulate SARS-CoV-2 dynamics and virion mediated cell fusion under pharmacodynamics effects with PhysiCell
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CompuCell3D v4 Main Tool
Tools | 08 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
Base tool for CompuCell3D version 4 and greater. Allows running any of the demos included with CC3D (/CompuCell3D_Demos/Demos)
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Multiscale Multicellular Modeling of Tissue Function and Disease using CompuCell3D
Online Presentations | 03 Jun 2020 | Contributor(s):: James A Glazier, Juliano Ferrari Gianlupi
Multiscale multicellular models combine representations of subcellular biological networks, cell behaviors, tissue level effects and whole body effects to describe tissue outcomes during development, homeostasis and disease. I will briefly introduce these simulation methodologies, the CompuCell3D...
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COVID 19 Virtual Tissue Model - Tissue Infection and Immune Response Dynamics
Tools | 26 May 2020 | Contributor(s):: T.J. Sego, Josua Oscar Aponte-Serrano, Juliano Ferrari Gianlupi
Simulates tissue and immune system interactions during a viral lung infection
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A virion infected-cell response tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate infected cell response to virus with PhysiCell
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A virion replication tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate virus replication dynamics with PhysiCell
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A virion endocytosis tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate virus endocytosis (internalization), ACE2 receptor dynamics with PhysiCell
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PhysiCell model for COVID19
Tools | 26 Mar 2020 | Contributor(s):: Randy Heiland, Yafei Wang, Paul Macklin
Prototype 2-D multicellular simulation of COVID19.