Tools (1-15 of 15)

1. CompuCell3D - Simulation of cell crawling in 3D

   03 Feb 2022

   Deploys the CompuCell3D simulation of cell crawling in 3D by Fortuna et al. 2020 https://doi.org/10.1016/j.bpj.2020.04.024

2. Cancer Evolution in CompuCell3D

   27 May 2021 | Contributor(s):: Juliano Ferrari Gianlupi, James A Glazier

   Demonstrates implemetation of cancer evolution in CompuCell3D

3. Multicellular modeling of SARS-CoV-2 dynamics and virion mediated cell fusion with antiviral drug effects

   Tools | 27 Jul 2020 | Contributor(s):: Yafei Wang, Michael Getz, Randy Heiland, Paul Macklin

   Simulate SARS-CoV-2 dynamics and virion mediated cell fusion under pharmacodynamics effects with PhysiCell

4. CompuCell3D - Simulation of angiogenesis

   Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego

   CompuCell3D simulates angiogenesis using chemical signals

5. PhysiCell model for COVID19

   Tools | 26 Mar 2020 | Contributor(s):: Randy Heiland, Yafei Wang, Paul Macklin

   Prototype 2-D multicellular simulation of COVID19.

6. PhysiCell model with SBML intracellular model

   Tools | 10 Feb 2020 | Contributor(s):: Randy Heiland

   Each cell will have its own intracellular (metabolic) model that will affect the microenvironment.

7. pc4thanos : Thanos vs. Avengers multicellular demonstrator

   Tools | 31 Jan 2020 | Contributor(s):: Paul Macklin

   PhysiCell Thanos vs. Avengers demonstrator for multicellular simulation techniques

8. PhysiCell biorobots simulation

   Tools | 12 Nov 2019 | Contributor(s):: Randy Heiland, Paul Macklin

   2D sim of director, worker, and cargo cells.

9. PhysiCell cancer biorobots simulation

   Tools | 28 Jan 2019 | Contributor(s):: Randy Heiland, Paul Macklin

   2D simulation of biorobots delivering a drug to cancer cells

10. Functionalization Workbench

    Tools | 30 Aug 2013 | Contributor(s):: AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev

    Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

11. Illinois Tools: NanoGromacsDemo

    Tools | 30 Oct 2006 | Contributor(s):: Dairui Chen, Derrick Kearney, Jay Mashl, Nahil Sobh, Eric Jakobsson

    Implementation of the popular molecular dynamics software suite GROMACS

12. Illinois Tools: NanoGromacs_Intro

    Tools | 07 May 2008 | Contributor(s):: Dairui Chen, Jay Mashl, Nahil Sobh, Eric Jakobsson

    Implementation of the popular molecular dynamics software suite GROMACS

13. biomoca

    Tools | 30 May 2006 | Contributor(s):: Reza Toghraee, Umberto Ravaioli

    Ion channel simulator

14. Illinois Tools: NanoGromacs

    Tools | 27 Feb 2008 | Contributor(s):: Dairui Chen, Derrick Kearney, Jay Mashl, Nahil Sobh, Eric Jakobsson

    Implementation of the popular molecular dynamics software suite GROMACS

15. BioMOCA Suite

    Tools | 04 Feb 2008 | Contributor(s):: David Papke, Reza Toghraee, Umberto Ravaioli, Ankit Raj

    Simulates ion flow through a channel.