Tools (1-20 of 22)

1. Molecular Dynamics Showcase Builder

   Tools | 09 Nov 2015 | Contributor(s):: Michael McLennan, Nicholas K Kisseberth, George A. Howlett, Jim Slopsema, Aleksei Aksimentiev, Chen-Yu Li

   Tool to create showcases for the Molecular Dynamics Showcase viewer.

2. Traction Force Microscopy

   Tools | 17 Apr 2014 | Contributor(s):: Bara Saadah, AbderRahman N Sobh, Alireza Tofangchi

   This is a tool for particle motion tracking with respect to physical forces.

3. nanoDDSCAT+

   Tools | 13 Aug 2014 | Contributor(s):: AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain

   Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

4. Nanoindentation

   Tools | 28 Oct 2013 | Contributor(s):: Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk

   Nanoindentation for Mechanical Characterization of Soft Materials

5. nanoDDSCAT

   Tools | 23 Apr 2013 | Contributor(s):: Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

   Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

6. Molecular Dynamics Showcase

   Tools | 06 Jul 2013 | Contributor(s):: Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev, George A. Howlett

   View interesting features of a molecular dynamics trajectory file

7. [Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights

   Tools | 07 Jul 2013 | Contributor(s):: AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

   This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.

8. [Illinois]: Perturbative Reinforcement Learning to Develop Distributed Representations

   Tools | 10 Jul 2013 | Contributor(s):: AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

   This tool trains three-layered networks of sigmoidal units to associate patterns.

9. [Illinois]: Perturbative Reinforcement Learning Using Directed Drift

   Tools | 10 Jul 2013 | Contributor(s):: AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

   This tool trains two-layered networks of sigmoidal units to associate patterns using a real-valued adaptation of the directed drift algorithm.

10. [Illinois]: Error Gradient Estimations Due to Perturbation of One Weight at a Time

    Tools | 29 Jun 2013 | Contributor(s):: AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using perturbation of one weight at a time.

11. [Illinois]: Avoidance Learn Simulation with 'Call' Neuron

    Tools | 25 Jun 2013 | Contributor(s):: AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance learning as a reinforcement learning with two upper motoneurons (sumo and fumo) and one "call" neuron.

12. [Illinois]: Avoidance Learn Simulation

    Tools | 20 Jun 2013 | Contributor(s):: AbderRahman N Sobh, NanoBio Node, Jessica S Johnson

    This script simulates avoidance conditioning as reinforcement learning with two upper motoneurons (SUMO and FUMO).

13. Accurate Chemical Master Equation (ACME)

    Tools | 20 May 2013 | Contributor(s):: Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang

    Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in biological networks.

14. CNT Mobility

    Tools | 26 Apr 2009 | Contributor(s):: Yang Zhao, Albert Liao, Eric Pop

    Simulate field effect carrier mobility in back-gated CNTFET devices at low field

15. Illinois Tools: Basic Bulk Silicon Transport Data at 300K

    Tools | 27 Oct 2009 | Contributor(s):: Kyeong-hyun Park, Mohamed Mohamed, Nahil Sobh, Fawad Hassan

    Calculations of doped bulk silicon transport data (new version release)

16. imageJ

    Tools | 03 Apr 2009 | Contributor(s):: Raheem Syed, Nahil Sobh, Umberto Ravaioli, Gabriel Popescu, Mohamed Mohamed

    It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. It can read many image formats.

17. Illinois Tools: NanoGromacsDemo

    Tools | 30 Oct 2006 | Contributor(s):: Dairui Chen, Derrick Kearney, Jay Mashl, Nahil Sobh, Eric Jakobsson

    Implementation of the popular molecular dynamics software suite GROMACS

18. nanoJoule

    Tools | 28 May 2008 | Contributor(s):: Feifei Lian, Feifei Lian, Feifei Lian

    This tool performs a self-consistent simulation of the current-voltage curve of a metallic single-wall carbon nanotube with Joule heating.

19. biomoca

    Tools | 30 May 2006 | Contributor(s):: Reza Toghraee, Umberto Ravaioli

    Ion channel simulator

20. Quantum and Semi-classical Electrostatics Simulation of SOI Trigates

    Tools | 19 Feb 2008 | Contributor(s):: Hyung-Seok Hahm, Andres Godoy

    Generate quantum/semi-classical electrostatic simulation results for a simple Trigate structure