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PhysiCell model for tumor hypoxia
Tools | 07 Aug 2020 | Contributor(s):: Lima Da Rocha, Heber, Paul Macklin, Furkan Kurtoglu
Multicellular simulation in 2-D of tumor hypoxia.
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COVID-19 data analysis
Tools | 07 Aug 2020 | Contributor(s):: Randy Heiland, Paul Macklin
Perform data analysis in a Jupyter notebook using data from the pc4covid19 tool.
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Multicellular modeling of SARS-CoV-2 dynamics and virion mediated cell fusion with antiviral drug effects
Tools | 27 Jul 2020 | Contributor(s):: Yafei Wang, Michael Getz, Randy Heiland, Paul Macklin
Simulate SARS-CoV-2 dynamics and virion mediated cell fusion under pharmacodynamics effects with PhysiCell
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PhysiBoSSa: cell fate decision in TNF Boolean model
Tools | 13 May 2020 | Contributor(s):: Gerard Pradas, Arnau Montagud, Miguel Ponce de Leon
PhysiBoSSa model of the cell fate decision in TNF Boolean model in a multicellular multiscale system
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PhysiBoSSa Simulation with ECM
Tools | 20 Apr 2020 | Contributor(s):: Marco Ruscone, Vincent Noel, Laurence Calzone, Gaelle Letort, Arnau Montagud
Agent based multicellular simulation with extracellular matrix interaction
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A virion infected-cell response tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate infected cell response to virus with PhysiCell
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A virion replication tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate virus replication dynamics with PhysiCell
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A virion endocytosis tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate virus endocytosis (internalization), ACE2 receptor dynamics with PhysiCell
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PhysiCell model for COVID19
Tools | 26 Mar 2020 | Contributor(s):: Randy Heiland, Yafei Wang, Paul Macklin
Prototype 2-D multicellular simulation of COVID19.
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Mechanics Training App for PhysiCell
Tools | 14 Feb 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Mishler, Daniel S, Randy Heiland, Paul Macklin
Training application for "Mechanics" concept in PhysiCell.
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PhysiCell model with SBML intracellular model
Tools | 10 Feb 2020 | Contributor(s):: Randy Heiland
Each cell will have its own intracellular (metabolic) model that will affect the microenvironment.
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Volume Training App for PhysiCell
Tools | 10 Feb 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus
Training application for "Volume" concept in PhysiCell.
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pc4thanos : Thanos vs. Avengers multicellular demonstrator
Tools | 31 Jan 2020 | Contributor(s):: Paul Macklin
PhysiCell Thanos vs. Avengers demonstrator for multicellular simulation techniques
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Death Training App for PhysiCell
Tools | 28 Jan 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Randy Heiland, Paul Macklin
Training application for "Death" concept in PhysiCell.
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PhysiCell: Extracellular Matrix Modeling
Tools | 10 Dec 2019 | Contributor(s):: John Metzcar, Ben Duggan, Randy Heiland, Daniel Matthew Murphy, Paul Macklin
An extracellular matrix model developed in PhysiCell.
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PhysiCell workshop training
Tools | 13 Nov 2019 | Contributor(s):: Randy Heiland
Provide a general purpose PhysiCell app for training.
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PhysiCell biorobots simulation
Tools | 12 Nov 2019 | Contributor(s):: Randy Heiland, Paul Macklin
2D sim of director, worker, and cargo cells.
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Motility Training App for PhysiCell
Tools | 17 Oct 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland, Paul Macklin
Training application for "Motility" concept in PhysiCell.
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Motility Training App
Tools | 20 Sep 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Mary Chen, Drew Willis, Randy Heiland, Paul Macklin
Training application for "Motility" concept in PhysiCell.
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Multi-species Biofilm on Wound Surface
Tools | 01 May 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus
This is a class project that aims modeling two-species biofilm that grows on a wound