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Jul 25 2022
2022 PhysiCell Workshop
PhysiCell is an open source, agent-based simulation framework for simulating complex multicellular systems. It simulates the chemical environment (diffusion of substrates and signaling factors),...
https://nanohub.org/events/details/2186
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May 20 2022
2022 PhysiCell Workshop and Hackathon Application Deadline
PhysiCell Workshop & Hackathon - 2022Dates: July 24 - 30, 2022Time: 11:00 a.m - 6:00 p.m EDT (main session takes place Mon-Fri)This virtual event consists of two parts: the free...
https://nanohub.org/events/details/2178
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A virion endocytosis tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate virus endocytosis (internalization), ACE2 receptor dynamics with PhysiCell
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A virion infected-cell response tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate infected cell response to virus with PhysiCell
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A virion replication tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate virus replication dynamics with PhysiCell
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AMIGOS - Hypoxia
Tools | 25 Apr 2019 | Contributor(s):: Furkan Kurtoglu, John Metzcar, Kali Nicole Konstantinopoulos, Timothy M Mahajan, Randy Heiland, Paul Macklin
Modeling Tumor in Hypoxic Condition
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Biology of COVID-19 Attack on Epithelial Cells, understood from a Modeling and Simulation Perspective
Online Presentations | 04 Feb 2021 | Contributor(s):: Paul Macklin
n this session, we describe a community-driven effort to iteratively develop a multiscale, spatially-resolved open source model of SARS-CoV-2 dynamics and immune response in tissues.
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COVID-19 data analysis
Tools | 07 Aug 2020 | Contributor(s):: Randy Heiland, Paul Macklin
Perform data analysis in a Jupyter notebook using data from the pc4covid19 tool.
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Cycle Training App for PhysiCell
Tools | 18 Dec 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland, Paul Macklin
Training application for "Cycle" concept in PhysiCell.
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Death Training App for PhysiCell
Tools | 28 Jan 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Randy Heiland, Paul Macklin
Training application for "Death" concept in PhysiCell.
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How Simple Cell-Cell Interactions Lead to Complex Multicellular Dynamics
Online Presentations | 04 Feb 2021 | Contributor(s):: Paul Macklin
In this talk, we use agent-based simulation models to simulate (1) individual cell behaviors, (2) cell-cell interactions, and (3) cell-environment interactions to show how simple rules can give rise to complex multicellular phenomena. We showcase and explore free, interactive online tools to...
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MathCancer group at nanobioHUB
Groups
https://nanohub.org/groups/mathcancer
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Mechanics Training App for PhysiCell
Tools | 14 Feb 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Mishler, Daniel S, Randy Heiland, Paul Macklin
Training application for "Mechanics" concept in PhysiCell.
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Motility Training App
Tools | 20 Sep 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Mary Chen, Drew Willis, Randy Heiland, Paul Macklin
Training application for "Motility" concept in PhysiCell.
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Motility Training App for PhysiCell
Tools | 17 Oct 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland, Paul Macklin
Training application for "Motility" concept in PhysiCell.
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Multi-species Biofilm on Wound Surface
Tools | 01 May 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus
This is a class project that aims modeling two-species biofilm that grows on a wound
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Multicellular modeling of SARS-CoV-2 dynamics and virion mediated cell fusion with antiviral drug effects
Tools | 27 Jul 2020 | Contributor(s):: Yafei Wang, Michael Getz, Randy Heiland, Paul Macklin
Simulate SARS-CoV-2 dynamics and virion mediated cell fusion under pharmacodynamics effects with PhysiCell
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Multiscale model of the different modes of invasion
Tools | 02 Jun 2022 | Contributor(s):: Marco Ruscone, Arnau Montagud, Laurence Calzone, Vincent Noel
Simulate 2D/3D cancer cell invasion in extracellular matrix with PhysiBoSS
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pc4thanos : Thanos vs. Avengers multicellular demonstrator
Tools | 31 Jan 2020 | Contributor(s):: Paul Macklin
PhysiCell Thanos vs. Avengers demonstrator for multicellular simulation techniques
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PhysiBoSS simulation of COVID19 infection
Tools | 27 Oct 2020 | Contributor(s):: Vincent Noel, Miguel Ponce de Leon, Anna Niarakis, Laurence Calzone, Alfonso Valencia, Arnau Montagud
PhysiBoSS-COVID: the Boolean modelling of COVID-19 signalling pathways in a multicellular simulation framework