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CompuCell3D - Avascular Tumor Growth and Mutation
25 May 2023 | Contributor(s):: Juliano Ferrari Gianlupi
Avascular tumor, growing on nutrient, self-limited, mutates
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CompuCell3D - Simulation of cell crawling in 3D
03 Feb 2022
Deploys the CompuCell3D simulation of cell crawling in 3D by Fortuna et al. 2020 https://doi.org/10.1016/j.bpj.2020.04.024
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Cancer Evolution in CompuCell3D
27 May 2021 | Contributor(s):: Juliano Ferrari Gianlupi, James A Glazier
Demonstrates implemetation of cancer evolution in CompuCell3D
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Jul 27 2020
CompuCell3D 15th User Training Workshop
Goal:By the end of this two-week course, participants will have implemented a basic simulation of their particular biological problem of interest. Post-course support and collaboration will be...
https://nanohub.org/events/details/1835
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CompuCell3D v4 Main Tool
Tools | 08 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
Base tool for CompuCell3D version 4 and greater. Allows running any of the demos included with CC3D (/CompuCell3D_Demos/Demos)
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CompuCell3D - 2D wet foam coarsening
Tools | 04 Jun 2020
Simulates foam coarsening in a 2D wet foam
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CompuCell3D - 2D wet foam coarsening with drainage
Tools | 04 Jun 2020
Simulation of 2D wet foam with drainage (gravity)
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CompuCell3D - Cells random walking at different speeds
Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
Cells random walking at different speeds implemented through the motility plugin
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CompuCell3d cell sorting in a hexagonal lattice
Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
Showcases hexagonal lattice use in CompuCell3D by simulating cell sorting by difference in contact energies in a hexagonal lattice.
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CompuCell3D - Delta-Notch signaling in a group of cells
Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
CompuCell3D can solve individual cell's ODE and have the information of one cell affect another (implemented trough SBML)
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CompuCell3D v4 - Bacterium Macrophage simulation
Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
Macrophage hunts bacterium in a maze
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CompuCell3D - Simulation of angiogenesis
Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
CompuCell3D simulates angiogenesis using chemical signals
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Multiscale Multicellular Modeling of Tissue Function and Disease using CompuCell3D
Online Presentations | 03 Jun 2020 | Contributor(s):: James A Glazier, Juliano Ferrari Gianlupi
Multiscale multicellular models combine representations of subcellular biological networks, cell behaviors, tissue level effects and whole body effects to describe tissue outcomes during development, homeostasis and disease. I will briefly introduce these simulation methodologies, the CompuCell3D...
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COVID 19 Virtual Tissue Model - Tissue Infection and Immune Response Dynamics
Tools | 26 May 2020 | Contributor(s):: T.J. Sego, Josua Oscar Aponte-Serrano, Juliano Ferrari Gianlupi
Simulates tissue and immune system interactions during a viral lung infection
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CompuCell3D - Bacterium Macrophage
Tools | 17 Apr 2019 | Contributor(s):: Juliano Ferrari Gianlupi, Somogyi, Andy T
Simulation of macrophage chasing bacterium
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(CC3D v3 - old) CompuCell3D Vascular Tumor
Tools | 16 Apr 2019 | Contributor(s):: Juliano Ferrari Gianlupi, Somogyi, Andy T
Simulate 3D vascular tumor with CompuCell3D
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How do you use this tool?
Q&A|Open | Responses: 1
How do you use this tool? Are there any instructions?
https://nanohub.org/answers/question/2059