All Categories (81-100 of 678)

1. Gelatin Microfluidics

   Teaching Materials | 13 Jan 2020 | Contributor(s):: Javier Cervantes, NNCI Nano

   This lab shows the importance of channel design in biotechnology and nanotechnology and the methods used to study the behavior of fluids as they flow through a channel.  Students will create and test a microfluidic device by creating narrow channels in gelatin, injecting dye in the...

2. Lab on a Slab: Microfluidics Activity

   Teaching Materials | 13 Jan 2020 | Contributor(s):: John Gomm, NNCI Nano

   Microfluidics is a technique for manipulating liquid samples. With one drop of liquid sample, small devices and channels can be used with nanoparticles for sensitive detection of chemicals. In this lab, students will create a fluidic device with agar gel and use it to test and diagnose three...

3. Nanoparticle Shape Lab

   Tools | 10 Jan 2020 | Contributor(s):: JCS Kadupitiya, Nicholas E. Brunk, Vikram Jadhao

   Simulates the low-energy shapes of nanocontainers over a wide range of solution conditions

4. PhysiCell: Extracellular Matrix Modeling

   Tools | 10 Dec 2019 | Contributor(s):: John Metzcar, Ben Duggan, Randy Heiland, Daniel Matthew Murphy, Paul Macklin

   An extracellular matrix model developed in PhysiCell.

5. PhysiCell workshop training

   Tools | 13 Nov 2019 | Contributor(s):: Randy Heiland

   Provide a general purpose PhysiCell app for training.

6. PhysiCell biorobots simulation

   Tools | 12 Nov 2019 | Contributor(s):: Randy Heiland, Paul Macklin

   2D sim of director, worker, and cargo cells.

7. Biological 3D Structures by Cryo-EM: Challenges in Computations and Instruments

   Online Presentations | 23 Oct 2019 | Contributor(s):: Wen Jiang

   Single particle cryo-EM is revolutionizing structural biology. Many structures of viruses and protein complexes have been determined to 2-4 Å resolutions. While stable structures that can be expressed/purified in large quantities can be solved routinely, the dynamic compositions and...

8. Motility Training App for PhysiCell

   Tools | 17 Oct 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland, Paul Macklin

   Training application for "Motility" concept in PhysiCell.

9. Soft Materials for Studying Hard Biological Problems

   Online Presentations | 15 Oct 2019 | Contributor(s):: Kristi S. Anseth

    This talk will illustrate how we leverage these and other reversible chemistries to create biologically responsive hydrogel matrices, and employ them to study the effects of matricellular signaling on diverse cellular functions and processes.  For example, we exploit...

10. Motility Training App

    Tools | 20 Sep 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Mary Chen, Drew Willis, Randy Heiland, Paul Macklin

    Training application for "Motility" concept in PhysiCell.

11. Tellurium

    Tools | 26 Aug 2019 | Contributor(s):: Somogyi, Andy T

    1.0

12. Soft Electronic and Microfluidic Systems for the Skin

    Online Presentations | 23 May 2019 | Contributor(s):: John A. Rogers

    This talk describes the key ideas, and presents some of the most recent device examples, including wireless, skin-like electronic 'tattoos' for continuous monitoring of vital signs in neonatal intensive care, microfluidic/electronic platforms that can capture, store and perform...

13. Multi-species Biofilm on Wound Surface

    Tools | 01 May 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus

    This is a class project that aims modeling two-species biofilm that grows on a wound

14. AMIGOS - Hypoxia

    Tools | 25 Apr 2019 | Contributor(s):: Furkan Kurtoglu, John Metzcar, Kali Nicole Konstantinopoulos, Timothy M Mahajan, Randy Heiland, Paul Macklin

    Modeling Tumor in Hypoxic Condition

15. PhysiCell: infected system and off-site immune system

    Tools | 23 Apr 2019 | Contributor(s):: Parichit Sharma, Yafei Wang

    Studying the interaction between an ODE driven offsite system and a system under invasion through Agent Based Modelling in PhysiCell.

16. Replication Competent Oncolytic Virus expressing secretable trimeric TRAIL: hypothesis testing

    Tools | 23 Apr 2019 | Contributor(s):: Adrianne Jenner, Paul Macklin

    Using PhysiCell to simulate a replication competent oncolytic virus expressing secretable trimeric TRAIL which induces apoptosis in nearby cells

17. Wound Healing - Physicell

    Tools | 22 Apr 2019 | Contributor(s):: Juliano Ferrari Gianlupi, Vedang Narain

    Wound healing simulation using physicell

18. Replication Competent Oncolytic Virus in Epithelial cell layer

    Tools | 18 Apr 2019 | Contributor(s):: Adrianne Jenner, Paul Macklin

    PhysiCell simulation of a replication competent oncolytic virus release from two veins, diffusing through a layer of epithelial cells.

19. CompuCell3D - Bacterium Macrophage

    Tools | 17 Apr 2019 | Contributor(s):: Juliano Ferrari Gianlupi, Somogyi, Andy T

    Simulation of macrophage chasing bacterium

20. Spatial Pattern Formation in Cell Based Models

    Tools | 17 Apr 2019 | Contributor(s):: Ben Duggan, John Metzcar

    Exploring spatial pattern formation in cell-based models, starting with Turing patterns in PhysiCell