Tools (81-100 of 149)

1. Nanoindentation of Soft Elastic Materials

   Tools | 04 Jan 2015 | Contributor(s):: Taha Goudarzi

   Estimates Young's Modulus of a soft material from its force-displacement data of nanoindentaton test.

2. Nanoindentation of soft viscoelastic materials

   Tools | 04 Jan 2015 | Contributor(s):: Taha Goudarzi

   Finds viscoelastic parameters of Standard Linear Solid models from experimental data

3. nanoDDSCAT+

   Tools | 13 Aug 2014 | Contributor(s):: AbderRahman N Sobh, Sarah White, Jeremy Smith, Nahil Sobh, Prashant K Jain

   Combines the Discrete Dipole Scattering (DDSCAT) tool with the DDAConvert tool for a single workflow for custom shapes.

4. IMOD online

   Tools | 09 Jun 2014 | Contributor(s):: Mingxuan Lu, Chang Wan Han, Benjamin P Haley, Volkan Ortalan

   Online IMOD tool for electron tomography

5. Nanoindentation

   Tools | 28 Oct 2013 | Contributor(s):: Taha Goudarzi, AbderRahman N Sobh, Kathy Walsh, Nahil Sobh, Iwona Jasiuk

   Nanoindentation for Mechanical Characterization of Soft Materials

6. nanoDDSCAT

   Tools | 23 Apr 2013 | Contributor(s):: Prashant K Jain, Nahil Sobh, Jeremy Smith, AbderRahman N Sobh, Sarah White, Jacob Faucheaux, John Feser

   Calculate scattering and absorption of light by targets with arbitrary geometries and complex refractive index.

7. cadnano to PDB File Converter

   Tools | 13 Nov 2013 | Contributor(s):: Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev

   Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.

8. Functionalization Workbench

   Tools | 30 Aug 2013 | Contributor(s):: AbderRahman N Sobh, Chen-Yu Li, Nahil Sobh, Aleksei Aksimentiev

   Using molecular dynamic simulation - explore the interactions between a molecular structure and substrate when they are linked together.

9. Tensile Mechanics of alpha-Helical Polypeptides

   Tools | 30 Aug 2013 | Contributor(s):: Korosh Torabi, George C. Schatz

   This model is capable of making quantitatively accurate predictions of force-extension behavior of a given helix-forming polypeptide sequence including its dependence on pH, temperature and ionic strength.

10. Molecular Dynamics Showcase

    Tools | 06 Jul 2013 | Contributor(s):: Michael McLennan, Chen-Yu Li, john stone, Aleksei Aksimentiev, George A. Howlett

    View interesting features of a molecular dynamics trajectory file

11. Neural Systems Modeling Ch10-13 Master Tool

    Tools | 02 Aug 2013 | Contributor(s):: Jessica S Johnson, NanoBio Node

    Combination of all tools used in Chapters 10-13 of Neural Systems Modeling by Anastasio

12. [Illinois]: Neural Systems Modeling Ch 6-9 Master Tool

    Tools | 26 Jul 2013 | Contributor(s):: Jessica S Johnson, NanoBio Node

    Combination of all tools used in Chapters 6-9 of Neural Systems Modeling by Anastasio

13. [Illinois]: Error Gradient Estimations Due to Parallel Perturbation of Weights

    Tools | 07 Jul 2013 | Contributor(s):: AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using simultaneous perturbation of weights.

14. [Illinois]: Perturbative Reinforcement Learning to Develop Distributed Representations

    Tools | 10 Jul 2013 | Contributor(s):: AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains three-layered networks of sigmoidal units to associate patterns.

15. [Illinois]: Perturbative Reinforcement Learning Using Directed Drift

    Tools | 10 Jul 2013 | Contributor(s):: AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool trains two-layered networks of sigmoidal units to associate patterns using a real-valued adaptation of the directed drift algorithm.

16. [Illinois]: Temporal Difference, Iterative Dynamic Programming, and Least Mean Squares

    Tools | 11 Jul 2013 | Contributor(s):: Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson

    This tool updates state values using the Temporal Difference Algorithm.

17. Crystalline Cellulose - Atomistic Toolkit

    Tools | 17 Jul 2013 | Contributor(s):: Mateo Gómez Zuluaga, Robert J. Moon, Fernando Luis Dri, Pablo Daniel Zavattieri

    Crystalline Cellulose - Atomistic Toolkit

18. [Illinois]: Direction Selectivity

    Tools | 13 Jul 2013 | Contributor(s):: Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool implements a simple direction selective network.

19. [Illinois]: Predict Correct Set Up

    Tools | 15 Jul 2013 | Contributor(s):: Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool sets up a predictor-corrector model of target tracking

20. [Illiniois]: SynchUp

    Tools | 16 Jul 2013 | Contributor(s):: Bara Saadah, Nahil Sobh, AbderRahman N Sobh, Jessica S Johnson, NanoBio Node

    This tool computes synchronous updates of autoassociative networks.