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CompuCell3d cell sorting in a hexagonal lattice
Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
Showcases hexagonal lattice use in CompuCell3D by simulating cell sorting by difference in contact energies in a hexagonal lattice.
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CompuCell3D - Delta-Notch signaling in a group of cells
Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
CompuCell3D can solve individual cell's ODE and have the information of one cell affect another (implemented trough SBML)
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CompuCell3D v4 - Bacterium Macrophage simulation
Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
Macrophage hunts bacterium in a maze
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CompuCell3D - Simulation of angiogenesis
Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego
CompuCell3D simulates angiogenesis using chemical signals
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COVID 19 Virtual Tissue Model - Tissue Infection and Immune Response Dynamics
Tools | 26 May 2020 | Contributor(s):: T.J. Sego, Josua Oscar Aponte-Serrano, Juliano Ferrari Gianlupi
Simulates tissue and immune system interactions during a viral lung infection
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PhysiBoSSa: cell fate decision in TNF Boolean model
Tools | 13 May 2020 | Contributor(s):: Gerard Pradas, Arnau Montagud, Miguel Ponce de Leon
PhysiBoSSa model of the cell fate decision in TNF Boolean model in a multicellular multiscale system
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A virion infected-cell response tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate infected cell response to virus with PhysiCell
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A virion replication tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate virus replication dynamics with PhysiCell
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A virion endocytosis tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate virus endocytosis (internalization), ACE2 receptor dynamics with PhysiCell
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Souffle: Virus Capsid Assembly Lab
Tools | 01 Apr 2020 | Contributor(s):: Nilsson, Lauren, JCS Kadupitiya, Vikram Jadhao
Simulate assembly of flexible capsomeres into virus capsids and oligomers
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PhysiCell model for COVID19
Tools | 26 Mar 2020 | Contributor(s):: Randy Heiland, Yafei Wang, Paul Macklin
Prototype 2-D multicellular simulation of COVID19.
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Mechanics Training App for PhysiCell
Tools | 14 Feb 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Mishler, Daniel S, Randy Heiland, Paul Macklin
Training application for "Mechanics" concept in PhysiCell.
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Volume Training App for PhysiCell
Tools | 10 Feb 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus
Training application for "Volume" concept in PhysiCell.
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pc4thanos : Thanos vs. Avengers multicellular demonstrator
Tools | 31 Jan 2020 | Contributor(s):: Paul Macklin
PhysiCell Thanos vs. Avengers demonstrator for multicellular simulation techniques
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Death Training App for PhysiCell
Tools | 28 Jan 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Randy Heiland, Paul Macklin
Training application for "Death" concept in PhysiCell.
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Nanoparticle Shape Lab
Tools | 10 Jan 2020 | Contributor(s):: JCS Kadupitiya, Nicholas E. Brunk, Vikram Jadhao
Simulates the low-energy shapes of nanocontainers over a wide range of solution conditions
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PhysiCell: Extracellular Matrix Modeling
Tools | 10 Dec 2019 | Contributor(s):: John Metzcar, Ben Duggan, Randy Heiland, Daniel Matthew Murphy, Paul Macklin
An extracellular matrix model developed in PhysiCell.
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PhysiCell workshop training
Tools | 13 Nov 2019 | Contributor(s):: Randy Heiland
Provide a general purpose PhysiCell app for training.
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PhysiCell biorobots simulation
Tools | 12 Nov 2019 | Contributor(s):: Randy Heiland, Paul Macklin
2D sim of director, worker, and cargo cells.
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Motility Training App for PhysiCell
Tools | 17 Oct 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland, Paul Macklin
Training application for "Motility" concept in PhysiCell.