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A virion endocytosis tissue simulator
Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin
Simulate virus endocytosis (internalization), ACE2 receptor dynamics with PhysiCell
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Souffle: Virus Capsid Assembly Lab
Tools | 01 Apr 2020 | Contributor(s):: Nilsson, Lauren, JCS Kadupitiya, Vikram Jadhao
Simulate assembly of flexible capsomeres into virus capsids and oligomers
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PhysiCell model for COVID19
Tools | 26 Mar 2020 | Contributor(s):: Randy Heiland, Yafei Wang, Paul Macklin
Prototype 2-D multicellular simulation of COVID19.
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Mechanics Training App for PhysiCell
Tools | 14 Feb 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Mishler, Daniel S, Randy Heiland, Paul Macklin
Training application for "Mechanics" concept in PhysiCell.
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Volume Training App for PhysiCell
Tools | 10 Feb 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus
Training application for "Volume" concept in PhysiCell.
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Micelles
Teaching Materials | 05 Feb 2020 | Contributor(s):: Dr. Lisa Siedman, Jeanette Mowery, Kyle Forgette, James J Marti, Nano-Link Center for Nanotechnology Education
This module introduces micelles and the concept of critical micelle concentration (CMC). Micelles have important applications in biotechnology. Micelles are sometimes used to deliver drugs to their target in the body. Micelles are also sometimes used to deliver genes into plant cells in...
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pc4thanos : Thanos vs. Avengers multicellular demonstrator
Tools | 31 Jan 2020 | Contributor(s):: Paul Macklin
PhysiCell Thanos vs. Avengers demonstrator for multicellular simulation techniques
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Assessment of Inhibition of Bacteria by Silver Colloid-Impregnated Bandages
Teaching Materials | 28 Jan 2020 | Contributor(s):: Heath Stout, Elinor Graf, Joann Dickert, NNCI Nano
This lab is designed to have students develop and implement their own experiment to test the antimicrobial properties of silver nanoparticles. Students will be required to document and communicate the entire process via their scientific notebook. Students will also consider the implications and...
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Overview of the nanoBIO Project
Series | 28 Jan 2020 | Contributor(s):: Geoffrey C. Fox
The safe and successful application of nanotechnology in the biological realm is a challenge due to the inherent multiscale nature of biology.Engineering nanoBIO devices requires the knowledge of how nanotechnology-based devices interact with biological systems at the bioenvironment, cell, and...
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Overview of the nanoBIO Project Part A: General Features and Motivation of Project
Online Presentations | 28 Jan 2020 | Contributor(s):: Geoffrey C. Fox
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Overview of the nanoBIO Project Part B: Nano-Micro and Micro Units
Online Presentations | 28 Jan 2020 | Contributor(s):: Geoffrey C. Fox
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Overview of the nanoBIO Project Part C: Digital Twins and Engineered Health
Online Presentations | 28 Jan 2020 | Contributor(s):: Geoffrey C. Fox
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Overview of the nanoBIO Project Part D: Visualization and Experimental Validation
Online Presentations | 28 Jan 2020 | Contributor(s):: Geoffrey C. Fox
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Death Training App for PhysiCell
Tools | 28 Jan 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Randy Heiland, Paul Macklin
Training application for "Death" concept in PhysiCell.
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Golden Opportunities: Gold Nanoparticles for Biomedical Applications
Online Presentations | 14 Jan 2020 | Contributor(s):: Catherine J. Murphy
In this talk I will discuss how these nanoparticles are prepared, how their surface chemistry can be tuned, how apparent cytotoxicity can be traced back to reagents in the synthesis rather than the particles per se, how protein orientation can be controlled on their surfaces, how cells respond...
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Gelatin Microfluidics
Teaching Materials | 13 Jan 2020 | Contributor(s):: Javier Cervantes, NNCI Nano
This lab shows the importance of channel design in biotechnology and nanotechnology and the methods used to study the behavior of fluids as they flow through a channel. Students will create and test a microfluidic device by creating narrow channels in gelatin, injecting dye in the...
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Lab on a Slab: Microfluidics Activity
Teaching Materials | 13 Jan 2020 | Contributor(s):: John Gomm, NNCI Nano
Microfluidics is a technique for manipulating liquid samples. With one drop of liquid sample, small devices and channels can be used with nanoparticles for sensitive detection of chemicals. In this lab, students will create a fluidic device with agar gel and use it to test and diagnose three...
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Nanoparticle Shape Lab
Tools | 10 Jan 2020 | Contributor(s):: JCS Kadupitiya, Nicholas E. Brunk, Vikram Jadhao
Simulates the low-energy shapes of nanocontainers over a wide range of solution conditions
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PhysiCell: Extracellular Matrix Modeling
Tools | 10 Dec 2019 | Contributor(s):: John Metzcar, Ben Duggan, Randy Heiland, Daniel Matthew Murphy, Paul Macklin
An extracellular matrix model developed in PhysiCell.
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PhysiCell workshop training
Tools | 13 Nov 2019 | Contributor(s):: Randy Heiland
Provide a general purpose PhysiCell app for training.