Tools (21-40 of 133)

1. Interactive Learning Tools for Scientific Computing and Data Analysis Using R

   Tools | 29 Jul 2020 | Contributor(s):: Cindy Nguyen, Rei Sanchez-Arias

   Root-finding methods and numerical optimization techniques with applications in science, engineering, and data analysis

2. Data Analysis of Normal Data Sets in Engineering

   Tools | 24 Jul 2020 | Contributor(s):: Joseph Joshua Williams, Nancy Ruzycki

   Statistical and data analysis concepts in engineering

3. Matlab Data Analysis Using Jupyter Notebooks

   Tools | 24 Jul 2020 | Contributor(s):: Jon Nykiel, Anna Leichty, Zachary D McClure, Alejandro Strachan, Aileen Ryan, Adrian Nat Gentry, Amanda Johnston, Tamara Jo Moore, Allen Garner, Peter Bermel

   Use Jupyter Notebooks with a Matlab kernel running in the background for data analysis and intro to engineering homework problems

4. Parsimonious neural networks

   Tools | 09 Jul 2020 | Contributor(s):: Saaketh Desai, Alejandro Strachan

   Design and train neural networks in conjunction with genetic algorithms to discover equations directly from data

5. Refractory Complex Concentrated Alloy Melting Point Calculation

   Tools | 28 May 2020 | Contributor(s):: Zachary D McClure, Saaketh Desai, Alejandro Strachan

   Calculate melting point of BCC-type high entropy alloys through phase coexistence method

6. Test Tool for Neural Network Reactive Force Field for CHNO systems

   Tools | 14 May 2020 | Contributor(s):: Pilsun Yoo, Saaketh Desai, Michael N Sakano, Peilin Liao, Alejandro Strachan

   Run molecular dynamics and Do testing using the neural network reactive force field for HE materials

7. PhysiBoSSa: cell fate decision in TNF Boolean model

   Tools | 13 May 2020 | Contributor(s):: Gerard Pradas, Arnau Montagud, Miguel Ponce de Leon

   PhysiBoSSa model of the cell fate decision in TNF Boolean model in a multicellular multiscale system

8. XRD interactive trends plot

   Tools | 11 May 2020 | Contributor(s):: Enze Chen

   Observe changes in powder XRD spectra by modifying experimental parameters.

9. PhysiBoSSa Simulation with ECM

   Tools | 20 Apr 2020 | Contributor(s):: Marco Ruscone, Vincent Noel, Laurence Calzone, Gaelle Letort, Arnau Montagud

   Agent based multicellular simulation with extracellular matrix interaction

10. Unsupervised learning using dimensionality reduction via matrix decomposition

    Tools | 14 Apr 2020 | Contributor(s):: Michael N Sakano, Alejandro Strachan

    Learn PCA and NMF via chemistry example

11. A virion infected-cell response tissue simulator

    Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

    Simulate infected cell response to virus with PhysiCell

12. A virion replication tissue simulator

    Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

    Simulate virus replication dynamics with PhysiCell

13. A virion endocytosis tissue simulator

    Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

    Simulate virus endocytosis (internalization), ACE2 receptor dynamics with PhysiCell

14. Querying Data Repositories

    Tools | 03 Apr 2020 | Contributor(s):: Zachary D McClure, Alejandro Strachan

    Query database repositories using Python based APIs and tips for managing data

15. Souffle: Virus Capsid Assembly Lab

    Tools | 01 Apr 2020 | Contributor(s):: Nilsson, Lauren, JCS Kadupitiya, Vikram Jadhao

    Simulate assembly of flexible capsomeres into virus capsids and oligomers

16. PhysiCell model for COVID19

    Tools | 26 Mar 2020 | Contributor(s):: Randy Heiland, Yafei Wang, Paul Macklin

    Prototype 2-D multicellular simulation of COVID19.

17. High Entropy Alloy Melting Point Calculation

    Tools | 05 Mar 2020 | Contributor(s):: Zachary D McClure, Saaketh Desai, Alejandro Strachan

    Calculate melting point of high entropy alloys through phase coexistence method

18. FIFA 2010 visualization

    Tools | 04 Mar 2020 | Contributor(s):: Rei Sanchez-Arias

    Data visualization of players that participated in the FIFA 2010 tournament

19. Mechanics Training App for PhysiCell

    Tools | 14 Feb 2020 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus, Mishler, Daniel S, Randy Heiland, Paul Macklin

    Training application for "Mechanics" concept in PhysiCell.

20. PhysiCell model with SBML intracellular model

    Tools | 10 Feb 2020 | Contributor(s):: Randy Heiland

    Each cell will have its own intracellular (metabolic) model that will affect the microenvironment.