PhysiCell learning by examples

Demonstrate PhysiCell modeling via sample models

Launch Tool

This tool version is unpublished and cannot be run. If you would like to have this version staged, you can put a request through HUB Support.

Archive Version 2.3
Published on 21 Feb 2023
Latest version: 2.4. All versions

doi:10.21981/CHRX-HX78 cite this

Open source: license | download

Category

Tools

Published on

Abstract

This app allows the selection of one of multiple sample projects that are included in the PhysiCell modeling framework.

  • Use the "Model" menu at the top to select a model (biorobots is the default)
  • Select the "Run" tab and "Run Simulation" button ("Cancel" before it stops if you just want to see brief, early results)
  • Select the "Plot" tab and "Play" the simulation results
  • Begin experimenting with changing various parameters of each model. Note that the "Cell Types" tab has sub-tabs for the various aspects of a cell type phenotype.
  • See the Virtual Course notes at https://github.com/physicell-training/ws2021 

Publications

Ghaffarizadeh A, Heiland R, Friedman SH, Mumenthaler SM, Macklin P (2018) PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems. PLoS Comput Biol 14(2): e1005991. https://doi.org/10.1371/journal.pcbi.1005991

Cite this work

Researchers should cite this work as follows:

  • Randy Heiland, Paul Macklin (2023), "PhysiCell learning by examples," https://nanohub.org/resources/pc4learning. (DOI: 10.21981/CHRX-HX78).

    BibTex | EndNote

Tags

  1. nanoBIO tools
  2. PhysiCell