Motility Training App

Training application for "Motility" concept in PhysiCell.

Launch Tool

This tool version is unpublished and cannot be run. If you would like to have this version staged, you can put a request through HUB Support.

Archive Version 1.0
Published on 20 Sep 2019 All versions

doi:10.21981/Y0M9-GB77 cite this

Open source: license | download

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Tools

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Abstract

Description

This application is produced by MathCancer Lab to explain "Motility" in PhysiCell [1]. User can specify basic simulation and motility parameters. To run the simulation with specified parameters, one should click the green "Run" button at the bottom of the page. In the Cell Plot section, sliding frame allows to visualize cell behavior in time. There is only one substrate in this simulation which is "tracer" that is secreted by cells to the environment. 

 

Motility

Cite this work

Researchers should cite this work as follows:

  • [1] Ghaffarizadeh A, Heiland R, Friedman SH, Mumenthaler SM, Macklin P (2018) PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems. PLoS Comput Biol 14(2): e1005991.

  • Furkan Kurtoglu, Aneequa Sundus, Kali Nicole Konstantinopoulos, Mary Chen (2019), "Motility Training App," https://nanohub.org/resources/motilitytrainin. (DOI: 10.21981/Y0M9-GB77).

    BibTex | EndNote

Tags

  1. BioFVM
  2. cell motility
  3. Jupyter notebooks
  4. nano/bio
  5. NanoBio Node at Indiana
  6. PhysiCell
  7. PhysiCell training