Sending report ...NanoGromacsDemo
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Usage Stats Last 12 Months: Updated 16 May, 2008 more › Users: 25 Jobs: 162 Avg. exec. time: 16 mins Reviews & Citations Google/IEEE Avg. Review: Citations: 0
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| Contributor(s) | Dairui Chen University of Illinois, Urbana-Champaign Derrick Kearney Purdue University, West Lafayette Jay Mashl, Nahil Sobh, Eric Jakobsson University of Illinois, Urbana-Champaign |
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| At a glance | A demo of the popular molecular dynamics software suite GROMACS |
| Screenshots | |
| Description | NanoGromacs is an interface for performing molecular dynamics (MD) simulations using Gromacs. NanoGromacs simplifies the task of assembling the input files required. Users can perform lipid and protein simulations by uploading their own structure file, selecting a corresponding force field, and setting the run-time parameters. Snapshots of coordinates generated by the simulation can be visualized on the nanoHUB, and corresponding structure files can be downloaded and visualized locally, for example, with PyMOL. Several of the analysis programs from Gromacs are also provided. |
| Powered by | Gromacs |
| Credits | Biophysics & Computational Biology Group University of Illinois at Urbana-Champaign |
| Cite this work | If you reference this work in a publication, please cite as follows:
In addition, we would appreciate it if you would add the following acknowledgment to your publication:
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| Version released | 27 Feb, 2008 |
| Type | Tools |
| Tags |
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