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[Illinois] Cancer Community Symposium 2012: DriveRank: Discovering Patient-Specific Driver Mutations
Online Presentations | 09 May 2012 | Contributor(s):: Jack Pu Hou
One of the pressing challenges in cancer genomics is to distinguish driver mutations (i.e. mutations involved in tumorigenesis) and passenger mutations (i.e. functionally neutral mutations). Current approaches to identifying driver mutations in cancer look for recurrent events in multiple...
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[Illinois] Cancer Community Symposium 2012: Elevated Estrogen Signaling Drives Tumorigenesis in a Novel Animal Model for Ovarian Epithelial Cancer
Online Presentations | 09 May 2012 | Contributor(s):: Mary Jo Laws
We generated a mouse model where aberrant estrogen receptor alpha (Esr1) signaling in the hypothalamo-pituitary-ovarian axis leads to ovarian tumorigenesis. In this model, termed Esr1d/d, the Esr1 gene is selectively deleted in the anterior pituitary. The Esr1d/d mice form palpable ovarian tumors...
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 15 - Foundation of Nanophotonics
Online Presentations | 04 Jan 2011 | Contributor(s):: Kent D Choquette
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2010 Nano-Biophotonics Summer School @ UIUC Lecture 16 - Plasmonics and Metamaterials
Online Presentations | 04 Jan 2011 | Contributor(s):: Nick Fang
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2010 Nano-Biophotonics Summer School at the University of Illinois at Urbana-Champaign
Workshops | 20 Sep 2010 | Contributor(s):: Gabriel Popescu, Stephen Boppart, Rohit Bhargava, Logan Liu, Nahil Sobh
The 2010 summer school covers: Principles of Nano-Biophotonics Technology and methods of investigation Current research (e.g. biomolecular sensing, nanoprobes, nonlinear microscopy, nanoscopy, nanoplasmonics)
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Jul 29 2013
2013 BioNanotechnology Summer Institute
The overall objective is to enhance the ability to address overarching challenges in the areas of Cancer Nanotechnology and Mechanobiology. Highly interdisciplinary in nature, the 2013 Summer...
https://nanohub.org/events/details/383
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A Fast Multigrid Approach for Solving the Helmholtz Equation with a Point Source
Online Presentations | 04 Feb 2016 | Contributor(s):: Eran Treister
Solving the discretized Helmholtz equations with high wave numbers in large dimensions is a challenging task. However, in many scenarios, the solution of these equations is required for a point source. In this case, the problem can be be reformulated and split into two parts: one in a solution of...
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A Massively Parallel Semicoarsening Multigrid for 3D Reservoir Simulation on Multi-core and Multi-GPU Architectures
Online Presentations | 04 Feb 2016 | Contributor(s):: Abdulrahman Manea
In this work, we have designed and implemented a massively parallel version of the Semicoarsening Black Box Multigrid Solver [1], which is capable of handling highly heterogeneous and anisotropic 3D reservoirs, on a parallel architecture with multiple GPU’s. For comparison purposes, the...
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A Multigrid Method for the Self-Adjoint Angular Flux Form of the Radiation-Transport Equation Based on Cellwise Block Jacobi Iteration
Online Presentations | 04 Feb 2016 | Contributor(s):: Jeffrey Densmore
Cellwise block Jacobi iteration is a technique for radiation-transport calculations in which the angular flux for all directions is solved for simultaneously within a spatial cell with the angular flux in neighboring cells held fixed. Each step of the iteration then involves the inversion of a...
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A Performance Comparison of Algebraic Multigrid Preconditioners on GPUs and MIC
Online Presentations | 04 Feb 2016 | Contributor(s):: Karl Rupp
Algebraic multigrid (AMG) preconditioners for accelerators such as graphics processing units (GPUs) and Intel's many-integrated core (MIC) architecture typically require a careful, problem-dependent trade-off between efficient hardware use, robustness, and convergence rate in order to...
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A Scalable Algorithm for Inverse Medium Problems with Multiple Sources
Online Presentations | 04 Feb 2016 | Contributor(s):: Keith Kelly
We consider the problem of acoustic scattering as described by the free-space, time-harmonic scalar wave equation given by (0.1) along with radiation boundary conditions. Here, is a point in , is the source term, and is the wavenumber. Our formulation is based on potential theory....
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Accurate Chemical Master Equation (ACME)
Tools | 20 May 2013 | Contributor(s):: Youfang Cao, Anna Terebus, John Feser, Nahil Sobh, Jie Liang
Direct solution method of discrete Chemical Master Equation (dCME) for the steady state, the time evolution of full probability landscapes, and the first passage time distribution (FPTD) in biological networks.
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Advanced Parallel CPU Programming Part 1: OmpSs Quick Overview
Online Presentations | 16 Aug 2013 | Contributor(s):: NanoBio Node, Xavier Teruel
High Performance Computing --> Some basic concepts, Supercomputers nowadays, Parallel programming models OmpSs Introduction --> OmpSs main features, A Practical Example: Cholesky factorization BSC’s Implementation --> Mercurium Compiler, Nanos++ Runtime Library, Visualization Tools
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Apr 15 2013
Aplication deadline for the 2013 BioNanotechnology Summer Institute
Join your colleagues at the2013 BioNanotechnology Summer InstituteJuly 29-August 9, 2013University of Illinois at Urbana-ChampaignThe Institute includes two weeks of lectures and hands-on training...
https://nanohub.org/events/details/384
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Application of Multigrid Techniques to Magnetic and Electromagnetic Systems
Online Presentations | 02 Feb 2016 | Contributor(s):: Benjamin Cowan
We discuss the use of multigrid techniques for several novel systems related to electromagnetics. One of these is the magnetostatic problem, in which systems can involve highly anisotropic and nonlinear materials. We describe the linear problems arising in several variations of this problem,...
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Bara Saadah
https://nanohub.org/members/82826
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BioSensorLab
Tools | 14 Aug 2006 | Contributor(s):: Pradeep R. Nair, Jonghyun Go, Graeme John Landells, Tejas Rajiv Pandit, Muhammad Alam, Xin Jin, Piyush Dak, Ankit Jain, Mohammad Ryyan Khan, Mohammad Ryyan Khan
BioSensorLab is a tool to evaluate and predict the performance parameters of Biosensors.
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cadnano to PDB File Converter
Tools | 13 Nov 2013 | Contributor(s):: Jejoong Yoo, AbderRahman N Sobh, Chen-Yu Li, Aleksei Aksimentiev
Accepts CadNano files in the form of *.json and outputs a file in *.pdb which can be read by programs such as VMD.
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Compatible Relaxation Based Geometric-Algebraic Multigrid
Online Presentations | 02 Feb 2016 | Contributor(s):: Fei Cao
We develop compatible relaxation algorithms for smoothed aggregation-based multigrid coarsening. In the proposed method, we use the geometry of the given discrete problem on the finest level to coarsen the system together with compatible relaxation to from the sparsity structure of the...
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Data-Centric Models for Multilevel Algorithms
Online Presentations | 05 Feb 2016 | Contributor(s):: Samuel Guiterrez
Today, computational scientists must contend with a diverse set of supercomputer architectures that are capable of exposing unprecedented levels of parallelism and complexity. Effectively placing, moving, and operating on data residing in complex distributed memory hierarchies is quickly becoming...