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NCN Nano-Devices for Medicine and Biology: Tutorials

Practical Introduction to the BioMOCA Suite

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Last 12 Months: updated 01 Aug, 2008
Users: 49
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Avg. Review: 0.0 out of 5 stars
Citations: 0

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Licensed under Creative Commons according to this deed.

Contributor(s) David Papke
University of Illinois, Urbana-Champaign
Abstract

In this presentation, I describe how to use the online BioMOCA Suite. I explain how to prepare the .pqr input protein structure from a .pdb structure. I then explain in detail how to use each of the four subtools in the BioMOCA Suite.

I do not cover in detail how the BioMOCA code works. If you are interested in learning about the code in more detail, you should watch the presentation "Ion Channels and BioMOCA" by Reza Toghraee.

The following paper also describes the BioMOCA Code:

T.A. Van Der Straaten, G. Kathawala, A. Trellakis, R.S. Eisenberg, and U. Ravaioli, "BioMOCA - a Boltzmann transport Monte Carlo model for ion channel simulations," Molecular Simulatin, Vol. 31, No. 2-3, pp 151-171 (2005).

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  • Papke, David (2008), "Practical Introduction to the BioMOCA Suite," http://www.nanohub.org/resources/4403/.

    BibTex | EndNote

Date posted 23 Apr, 2008
Type Publications
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  • 10.0 Ranking Series Part of: NCN Nano-Devices for Medicine and Biology: Tutorials

    NCN Nano-Devices for Medicine and Biology: Tutorials

    Type Series
    Date 19 Jun, 2008
    Avg. Rating 0.0 out of 5 stars  (0)
    Rate this

    From among the many tutorial lectures available on the nanoHUB, we list a few that convey new approaches to the development of new kinds of devices for applications in medicine and biology.

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