All Categories (101-120 of 181)

1. DataExplorer Lab

   Tools | 23 May 2019 | Contributor(s):: Daniel F Mejia

   DataExplorerLab is a python Tool that allows exploration of datasets using visualizations, this is based on Floatview library

2. Preferences For Jupyter

   Tools | 02 May 2019 | Contributor(s):: Martin Hunt

   A Preferences Dialog for the Jupyter Environment

3. Multi-species Biofilm on Wound Surface

   Tools | 01 May 2019 | Contributor(s):: Furkan Kurtoglu, Aneequa Sundus

   This is a class project that aims modeling two-species biofilm that grows on a wound

4. AMIGOS - Hypoxia

   Tools | 25 Apr 2019 | Contributor(s):: Furkan Kurtoglu, John Metzcar, Kali Nicole Konstantinopoulos, Timothy M Mahajan, Randy Heiland, Paul Macklin

   Modeling Tumor in Hypoxic Condition

5. PhysiCell: infected system and off-site immune system

   Tools | 23 Apr 2019 | Contributor(s):: Parichit Sharma, Yafei Wang

   Studying the interaction between an ODE driven offsite system and a system under invasion through Agent Based Modelling in PhysiCell.

6. Replication Competent Oncolytic Virus expressing secretable trimeric TRAIL: hypothesis testing

   Tools | 23 Apr 2019 | Contributor(s):: Adrianne Jenner, Paul Macklin

   Using PhysiCell to simulate a replication competent oncolytic virus expressing secretable trimeric TRAIL which induces apoptosis in nearby cells

7. Wound Healing - Physicell

   Tools | 22 Apr 2019 | Contributor(s):: Juliano Ferrari Gianlupi, Vedang Narain

   Wound healing simulation using physicell

8. Jupyter Notebook (201904)

   Tools | 18 Apr 2019

   Starts the Jupyter notebook server in your home directory.

9. Replication Competent Oncolytic Virus in Epithelial cell layer

   Tools | 18 Apr 2019 | Contributor(s):: Adrianne Jenner, Paul Macklin

   PhysiCell simulation of a replication competent oncolytic virus release from two veins, diffusing through a layer of epithelial cells.

10. Spatial Pattern Formation in Cell Based Models

    Tools | 17 Apr 2019 | Contributor(s):: Ben Duggan, John Metzcar

    Exploring spatial pattern formation in cell-based models, starting with Turing patterns in PhysiCell

11. Polyvalent Nanoparticle Binding Simulator

    Tools | 16 Apr 2019 | Contributor(s):: Nilsson, Lauren, JCS Kadupitiya, Vikram Jadhao

    Simulates the binding of ligand-decorated nanoparticles to cell membrane driven by ligand-cell-receptor attraction

12. PhysiCell_mscb_class

    Tools | 12 Apr 2019 | Contributor(s):: Yafei Wang

    simulation of ABM model

13. Melting point simulation using OpenKIM

    Tools | 22 Mar 2019 | Contributor(s):: Martin Hunt, Alejandro Strachan, Saaketh Desai

    Computes melting point using a coexistence technique using interatomic potentials from OpenKIM

14. Calibration using DAKOTA

    Tools | 21 Mar 2019 | Contributor(s):: Saaketh Desai, Alejandro Strachan

    Uses DAKOTA to perform deterministic and Bayesian calibration

15. Jupyter Examples

    Tools | 19 Mar 2019 | Contributor(s):: Martin Hunt

    Users Manual and Examples for Jupyter

16. PhysiCell: biased random migration demonstrator

    Tools | 22 Feb 2019 | Contributor(s):: Paul Macklin, Randy Heiland

    PhysiCell demonstration of biased random cell migration

17. PhysiCell cancer-immune model

    Tools | 21 Feb 2019 | Contributor(s):: Paul Macklin, Randy Heiland

    PhysiCell model of immune cells attacking a heterogeneous tumor

18. Composite Filament Simulation 3D

    Tools | 15 Feb 2019 | Contributor(s):: Zachary Yun, Michelle Zhang, Ganesh Vurimi, Hayden Taylor, Sixian Jia

    Simulate electrical properties of a nanowire composite filament.

19. Solidification Simulation of Pure Metal in Semi-Infinite Mold

    Tools | 12 Feb 2019 | Contributor(s):: Michael S Titus, Justin Cooper, Dongsheng Wen

    Simulate the solidification of various pure metals in various mold materials. Adjust mold and metal properties.

20. PhysiCell for tumor heterogeneity

    Tools | 12 Feb 2019 | Contributor(s):: Randy Heiland, Paul Macklin

    2D simulation of tumor heterogeneity