All Categories (1-20 of 21)

1. A Vaccine Model for COVID-19

   Tools | 25 Jan 2021 | Contributor(s):: Kali Nicole Konstantinopoulos, James A Glazier (editor), Josua Oscar Aponte-Serrano (editor)

   Simulate the introduction of a vaccine in the COVID-19 pandemic, focused on the US.

2. A virion endocytosis tissue simulator

   Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

   Simulate virus endocytosis (internalization), ACE2 receptor dynamics with PhysiCell

3. A virion infected-cell response tissue simulator

   Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

   Simulate infected cell response to virus with PhysiCell

4. A virion replication tissue simulator

   Tools | 13 Apr 2020 | Contributor(s):: Yafei Wang, Randy Heiland, Paul Macklin

   Simulate virus replication dynamics with PhysiCell

5. Biology of COVID-19 Attack on Epithelial Cells, understood from a Modeling and Simulation Perspective

   Online Presentations | 04 Feb 2021 | Contributor(s):: Paul Macklin

   n this session, we describe a community-driven effort to iteratively develop a multiscale, spatially-resolved open source model of SARS-CoV-2 dynamics and immune response in tissues.

6. BNNTs

   Animations | 21 Aug 2022 | Contributor(s):: Shawna Lee-Paul, Rice University

   Boron nitride nanotubes (BNNTs) are nano particles with unique properties, including high mechanical strength, high thermal conductivity, and neutron shielding capacity. These properties are beneficial for numerous applications, such as aerospace, electronics, and energy-efficient...

7. CompuCell3D v4 Main Tool

   Tools | 08 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego

   Base tool for CompuCell3D version 4 and greater. Allows running any of the demos included with CC3D (/CompuCell3D_Demos/Demos)

8. COVID 19 Virtual Tissue Model - Tissue Infection and Immune Response Dynamics

   Tools | 26 May 2020 | Contributor(s):: T.J. Sego, Josua Oscar Aponte-Serrano, Juliano Ferrari Gianlupi

   Simulates tissue and immune system interactions during a viral lung infection

9. COVID-19 data analysis

   Tools | 07 Aug 2020 | Contributor(s):: Randy Heiland, Paul Macklin

   Perform data analysis in a Jupyter notebook using data from the pc4covid19 tool.

10. Deep Learning for Time Series Illustrated by COVID-19 Infection Studies

    Online Presentations | 04 Feb 2021 | Contributor(s):: Geoffrey C. Fox

    We show that one can study several sets of sequences or time-series in terms of an underlying evolution operator which can be learned with a deep learning network.

11. 

    James A Glazier

    Dr. Glazier’s research focuses on early embryonic development, developmental and chronic toxicity and developmental diseases, with more than 70 experimental and computational papers on biological...

    https://nanohub.org/members/191087

12. Nov 11 2020

    Materials Science for COVID-19: A Global Discussion Between Scientists

    Presented by MRS and The Society for Biomaterials (SFB)This webinar, hosted by Aleksandra Benko, AGH University of Science and Technology, will bring together researchers from all around the world...

    https://nanohub.org/events/details/1880

13. Modeling a COVID-19 Pandemic with a BSVIRD Model

    Tools | 28 Jan 2021 | Contributor(s):: Brian Yu, James A Glazier (editor), Josua Oscar Aponte-Serrano (editor)

    This model emulates the introduction of a two-dose vaccine in a COVID-19 pandemic, focusing on the United States.

14. Multicellular modeling of SARS-CoV-2 dynamics and virion mediated cell fusion with antiviral drug effects

    Tools | 27 Jul 2020 | Contributor(s):: Yafei Wang, Michael Getz, Randy Heiland, Paul Macklin

    Simulate SARS-CoV-2 dynamics and virion mediated cell fusion under pharmacodynamics effects with PhysiCell

15. Multiscale Multicellular Modeling of Tissue Function and Disease using CompuCell3D

    Online Presentations | 03 Jun 2020 | Contributor(s):: James A Glazier, Juliano Ferrari Gianlupi

    Multiscale multicellular models combine representations of subcellular biological networks, cell behaviors, tissue level effects and whole body effects to describe tissue outcomes during development, homeostasis and disease. I will briefly introduce these simulation methodologies, the CompuCell3D...

16. PhysiBoSS simulation of COVID19 infection

    Tools | 27 Oct 2020 | Contributor(s):: Vincent Noel, Miguel Ponce de Leon, Anna Niarakis, Laurence Calzone, Alfonso Valencia, Arnau Montagud

    PhysiBoSS-COVID: the Boolean modelling of COVID-19 signalling pathways in a multicellular simulation framework

17. PhysiCell COVID19 model v6 test

    Tools | 11 Feb 2022 | Contributor(s):: Randy Heiland, Paul Macklin

    PhysiCell COVID19 model v6 early testing

18. PhysiCell model for COVID19

    Tools | 26 Mar 2020 | Contributor(s):: Randy Heiland, Yafei Wang, Paul Macklin

    Prototype 2-D multicellular simulation of COVID19.

19. Saliva-Based Testing for COVID-19

    Online Presentations | 22 Nov 2020 | Contributor(s):: Mohit Verma

    The Verma lab is developing a molecular test for SARS-CoV-2 that detects the RNA and produces a color change in less than one hour. Using saliva as the sample, this test is easier to use at the point-of-care.

20. Understanding COVID-19 Infection, Immune Response, and Drug Therapy through Multiscale, Multicellular Modeling and Simulation

    Online Presentations | 10 Dec 2020 | Contributor(s):: T.J. Sego

    This workshop presents an open-source Python- and XML-scripted multiscale modeling and simulation framework of an epithelial tissue infected by a virus, a simplified cellular immune response and viral and immune-induced tissue damage and shows how to use it to model basic patterns of infection...